Publications

2015
Wilber MQ, Kitzes J, Harte J.  2015.  Scale collapse and the emergence of the power law species–area relationship. Global Ecology and Biogeography.
Li W, Ruth D, Gunton JD, Rickman JM.  2015.  Selective encapsulation by Janus particles. The Journal of chemical physics. 142:244705.
Bjaalie L, Ouellette DG, Moetakef P, Cain TA, Janotti A, Himmetoglu B, Allen SJ, Stemmer S, Van de Walle CG.  2015.  Small hole polarons in rare-earth titanates. Applied Physics Letters. 106:232103.
Garcia E.S, Tague CL.  2015.  Soil storage influences climate–evapotranspiration interactions in three western United States catchments. Hydrology and Earth System Sciences Discussions. 12:7893–7931.
Stipčević M, Bowers J.  2015.  Spatio-temporal optical random number generator. Optics Express. 23(9)
Guittet A, Theillard M, Gibou F.  2015.  A stable projection method for the incompressible Navier–Stokes equations on arbitrary geometries and adaptive Quad/Octrees. Journal of Computational Physics. 292:215–238.
Weston L, Janotti A, Cui XY, Himmetoglu B, Stampfl C, Van de Walle CG.  2015.  Structural and electronic properties of SrZrO 3 and Sr (Ti, Zr) O 3 alloys. Physical Review B. 92:085201.
Garcia ES, Tague CL.  2015.  Subsurface storage capacity influences climate–evapotranspiration interactions in three western United States catchments. Hydrology and Earth System Sciences. 19:4845–4858.
Gordon L, Varley JB, Lyons JL, Janotti A, Van de Walle CG.  2015.  Sulfur doping of AlN and AlGaN for improved n-type conductivity. physica status solidi (RRL)-Rapid Research Letters. 9:462–465.
Ganguly P, Do TD, Larini L, LaPointe NE, Sercel AJ, Shade MF, Feinstein SC, Bowers MT, Shea J-E.  2015.  Tau Assembly: The Dominant Role of PHF6 (VQIVYK) in Microtubule Binding Region Repeat R3. The Journal of Physical Chemistry B. 119:4582–4593.
Decolvenaere E, Gordon MJ, Van der Ven A.  2015.  Testing predictions from density functional theory at finite temperatures: $\beta$ 2-like ground states in Co-Pt. Physical Review B. 92:085119.
Zerze GH, Mullen RGotchy, Levine ZA, Shea J-E, Mittal J.  2015.  To what extent does surface hydrophobicity dictate peptide folding and stability near surfaces? Langmuir. 31(44):12223–12230.
Levine ZA, Fischer SA, Shea J-E, Pfaendtner J.  2015.  Trp-Cage Folding on Organic Surfaces. The Journal of Physical Chemistry B. 119:10417–10425.
Carilli MF, Delaney KT, Fredrickson GH.  2015.  Truncation-based energy weighting string method for efficiently resolving small energy barriers.. Journal of Chemical Physics. 143(5):054105.
Zhang JY, Hwang J, Isaac BJ, Stemmer S.  2015.  Variable-angle high-angle annular dark-field imaging: application to three-dimensional dopant atom profiling. Scientific reports. 5
Lewi T, Iyer PP, Butakov NA, Mikhailovsky AA, Schuller JA.  2015.  Widely tunable infrared antennas using free carrier refraction.. Nano Letters. 15(12):8188–8193.
2016
Keh MP, Leal LG.  2016.  Adhesion and detachment of a capsule in axisymmetric flow. Physical Review Fluids. 1(1):013201.
Kim B, Do TD, Hayden EY, Teplow DB, Bowers MT, Shea J-E.  2016.  Aggregation of Chameleon Peptides: Implications of $\alpha$-Helicity in Fibril Formation. Journal of Physical Chemistry B. 120(26):5874-5883.
Do TD, LaPointe NE, Nelson R, Krotee P, Hayden EY, Ulrich B, Quan S, Feinstein SC, Teplow DB, Eisenberg D et al..  2016.  Amyloid $\beta$-Protein C-terminal Fragments: Formation of Cylindrins and $\beta$-barrels. Journal of the American Chemical Society. 138:549–557.
Wong AG, Wu C, Hannaberry E, Watson MD, Shea J-E, Raleigh DP.  2016.  Analysis of the Amyloidogenic Potential of Pufferfish (Takifugu rubripes) Islet Amyloid Polypeptide Highlights the Limitations of Thioflavin-T Assays and the Difficulties in Defining Amyloidogenicity. Biochemistry. 55:510–518.
Bjaalie L, Azcatl A, McDonnell S, Freeze CR, Stemmer S, Wallace RM, Van de Walle CG.  2016.  Band alignments between SmTiO3, GdTiO3, and SrTiO3. Journal of Vacuum Science & Technology A. 34:061102.
Krishnaswamy K, Bjaalie L, Himmetoglu B, Janotti A, Gordon L, Van de Walle CG.  2016.  BaSnO3 as a channel material in perovskite oxide heterostructures. Applied Physics Letters. 108(8):083501.
Xulvi-Brunet R, Campbell GW, Rajamani S, Jiménez JI, Chen IA.  2016.  Computational analysis of fitness landscapes and evolutionary networks from in vitro evolution experiments. Methods. 106:86-96.
Dreyer CE, Janotti A, Van de Walle CG, Vanderbilt D.  2016.  Correct Implementation of Polarization Constants in Wurtzite Materials and Impact on III-Nitrides. Physical Review X. 6(2):021038.
Joswiak MN, Doherty MF, Peters B.  2016.  Critical length of a one-dimensional nucleus. Journal of Chemical Physics. 145(21):6.

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