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Journal Article

Alexandrou MA, Swartz BA, Matzke NJ, Oakley TH. 2013. Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae. Molecular phylogenetics and evolution. 69:514–523.

M Ramirez D, Pairett AN, M Pankey S, Serb JM, Speiser DI, Swafford AJ, Oakley TH. 2016. The last common ancestor of bilaterian animals possessed at least 7 opsins. Genome Biology and Evolution . 8(12):052902.

Battelle B-A, Kempler KE, Saraf SR, Marten CE, Dugger DR, Speiser DI, Oakley TH. 2015. Opsins in Limulus eyes: characterization of three visible light-sensitive opsins unique to and co-expressed in median eye photoreceptors and a peropsin/RGR that is expressed in all eyes. Journal of Experimental Biology. 218(3):466–479.

Oakley TH, Alexandrou MA, Ngo R, M Pankey S, Churchill CK, Chen W, Lopker KB. 2014. Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system. BMC bioinformatics. 15:230.

Oakley TH, Wolfe JM, Lindgren AR, Zaharoff AK. 2013. Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement and Pancrustacean Phylogeny. Molecular Biology and Evolution. 30(1):215.

M Pankey S, Minin VN, Imholte GC, Suchard MA, Oakley TH. 2014. Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid. Proceedings of the National Academy of Sciences. 111:E4736–E4742.

Acknowledgements

Please acknowledge the CSC in publications and presentations if you are using our facilities computing resources in your research.

Use was made of computational facilities purchased with funds from the National Science Foundation (CNS-1725797) and administered by the Center for Scientific Computing (CSC). The CSC is supported by the California NanoSystems Institute and the Materials Research Science and Engineering Center (MRSEC; NSF DMR 1720256) at UC Santa Barbara.