Publications

Filters: Author is Chialastri, Alex  [Clear All Filters]
2022
Chialastri A, Karzbrun E, Khankhel AH, Radeke MJ, Streichan SJ, Dey SS.  2022.  Integrated single-cell sequencing reveals principles of epigenetic regulation of human gastrulation and germ cell development in a 3D organoid model. bioRxiv.
2021
Chialastri A, Wangsanuwat C, Dey SS.  2021.  Integrated single-cell sequencing of 5-hydroxymethylcytosine and genomic DNA using scH&G-seq. STAR protocols. 2:101016.
2020
Markodimitraki CM, Rang FJ, Rooijers K, de Vries SS, Chialastri A, de Luca KL, Lochs SJA, Mooijman D, Dey SS, Kind J.  2020.  Simultaneous quantification of protein–DNA interactions and transcriptomes in single cells with scDam&T-seq. Nature Protocols. :1–32.
2019
Rooijers K, Markodimitraki CM, Rang FJ, de Vries SS, Chialastri A, de Luca KL, Mooijman D, Dey SS, Kind J.  2019.  scDam&T-seq combines DNA adenine methyltransferase-based labeling of protein-DNA contact sites with transcriptome sequencing to analyze regulatory programs in single cells. Nature biotechnology. 37:766.
Rooijers K, Markodimitraki CM, Rang FJ, de Vries SS, Chialastri A, de Luca KL, Mooijman D, Dey SS, Kind J.  2019.  Simultaneous quantification of protein–DNA contacts and transcriptomes in single cells. Nature biotechnology. :1.
Sen M, Mooijman D, Boisset J-C, Chialastri A, Popovic M, Heindryckx B, Lopes SMChuva de, Dey SS, van Oudenaarden A.  2019.  Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development. bioRxiv. :804526.

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Use was made of computational facilities purchased with funds from the National Science Foundation (CNS-1725797) and administered by the Center for Scientific Computing (CSC). The CSC is supported by the California NanoSystems Institute and the Materials Research Science and Engineering Center (MRSEC; NSF DMR 1720256) at UC Santa Barbara.

 

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