Publications

CSC research acknowledged in publications and presentations.

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Use was made of computational facilities purchased with funds from the National Science Foundation (CNS-1725797) and administered by the Center for Scientific Computing (CSC). The CSC is supported by the California NanoSystems Institute and the Materials Research Science and Engineering Center (MRSEC; NSF DMR 2308708) at UC Santa Barbara.

Selected Publications

2020

Embryonic Tissues as Active Foams
Kim, S., Pochitaloff, M., Stooke-Vaughan, G., & As, O. C. \. (2020). Embryonic Tissues as Active Foams. Biorxiv. https://doi.org/10.1101/2020.06.17.157909
Duet: Boosting deep neural network efficiency on dual-module architecture
Liu, L., Qu, Z., Deng, L., Tu, F., Li, S., Hu, X., et al. (2020). Duet: Boosting deep neural network efficiency on dual-module architecture. Presented at the. IEEE.
Effect of an electric field on the stability of binary dielectric fluid mixtures
Martin, J. M., Delaney, K. T., & Fredrickson, G. H. (2020). Effect of an electric field on the stability of binary dielectric fluid mixtures. The Journal Of Chemical Physics, 152, 234901. https://doi.org/10.1063/5.0010405
Effects of Counter-Ion Size on Delocalization of Carriers and Stability of Doped Semiconducting Polymers
Thomas, E. M., Peterson, K. A., Balzer, A. H., Rawlings, D., Stingelin, N., Segalman, R. A., & Chabinyc, M. L. (2020). Effects of Counter-Ion Size on Delocalization of Carriers and Stability of Doped Semiconducting Polymers. Advanced Electronic Materials, 2000595. https://doi.org/10.1002/aelm.202000595
Efficient and cost-effective bacterial mRNA sequencing from low input samples through ribosomal RNA depletion
Wangsanuwat, C., Heom, K. A., Liu, E., O\textquoterightMalley, M. A., & Dey, S. S. (2020). Efficient and cost-effective bacterial mRNA sequencing from low input samples through ribosomal RNA depletion. Bmc Genomics, 21, 1\textendash12. https://doi.org/10.1186/s12864-020-07134-4
Efficient Synthesis of Asymmetric Miktoarm Star Polymers
Levi, A. E., Fu, L., Lequieu, J., Horne, J. D., Blankenship, J., Mukherjee, S., et al. (2020). Efficient Synthesis of Asymmetric Miktoarm Star Polymers. Macromolecules. https://doi.org/10.1021/acs.macromol.9b02380
Dry reforming of methane catalysed by molten metal alloys
Palmer, C., Upham, C., Smart, S., Gordon, M. J., Metiu, H., & McFarland, E. W. (2020). Dry reforming of methane catalysed by molten metal alloys. Nature Catalysis, 3, 83\textendash89. https://doi.org/10.1038/s41929-019-0416-2
Electron backscattered diffraction using a new monolithic direct detector: High resolution and fast acquisition
Wang, F., Echlin, M. L. P., Taylor, A. A., Shin, J., Bammes, B., DA Levin, B., et al. (2020). Electron backscattered diffraction using a new monolithic direct detector: High resolution and fast acquisition. Ultramicroscopy, 113160. https://doi.org/10.1016/j.ultramic.2020.113160
Eliminating redundant computation in noisy quantum computing simulation
Li, G., Ding, Y., & Xie, Y. (2020). Eliminating redundant computation in noisy quantum computing simulation. Presented at the. IEEE.
End-to-End Distance Probability Distributions of Dilute Poly (ethylene oxide) in Aqueous Solution
Sherck, N., Webber, T., Brown, D. R., Keller, T., Barry, M., DeStefano, A., et al. (2020). End-to-End Distance Probability Distributions of Dilute Poly (ethylene oxide) in Aqueous Solution. Journal Of The American Chemical Society. https://doi.org/10.1021/jacs.0c08709
Elastic constants of pure body-centered cubic Mg in nanolaminates
Su, Y., Ardeljan, M., Knezevic, M., Jain, M., Pathak, S., & Beyerlein, I. J. (2020). Elastic constants of pure body-centered cubic Mg in nanolaminates. Computational Materials Science, 174, 109501. https://doi.org/https://doi.org/10.1016/j.commatsci.2019.109501

2019

The Mitochondrial Peptide Humanin Targets, but does not Denature Amyloid Oligomers in Type II Diabetes
Levine, Z. A., Teranishi, K., Okada, A. K., Langen, R., & Shea, J. -E. (2019). The Mitochondrial Peptide Humanin Targets, but does not Denature Amyloid Oligomers in Type II Diabetes. Journal Of The American Chemical Society. https://doi.org/10.1021/jacs.9b04995
Modeling magnetic evolution and exchange hardening in disordered magnets: The example of Mn 1- x Fe x Ru 2 Sn Heusler alloys
Decolvenaere, E., Levin, E., Seshadri, R., & Van der Ven, A. (2019). Modeling magnetic evolution and exchange hardening in disordered magnets: The example of Mn 1- x Fe x Ru 2 Sn Heusler alloys. Physical Review Materials, 3, 104411. https://doi.org/10.1103/PhysRevMaterials.3.104411
DNA Nunchucks: Nanoinstrumentation for Single-Molecule Measurement of Stiffness and Bending
Cai, X., Arias, S., Velazquez, L. R., Vexler, S., Bevier, A., & Fygenson, D. K. (2019). DNA Nunchucks: Nanoinstrumentation for Single-Molecule Measurement of Stiffness and Bending. Nano Letters. https://doi.org/http://dx.doi.org/10.1021/acs.nanolett.9b04980
Molecular design of self-coacervation phenomena in block polyampholytes
Danielsen, S. P. O., McCarty, J., Shea, J. -E., Delaney, K. T., & Fredrickson, G. H. (2019). Molecular design of self-coacervation phenomena in block polyampholytes. Proceedings Of The National Academy Of Sciences, 116, 8224\textendash8232. https://doi.org/doi/10.1073/pnas.1900435116
Multiscale network characterization of the strength and robustness of trabecular bone
Nguyen, C. (2019). Multiscale network characterization of the strength and robustness of trabecular bone. https://doi.org/10.1103/PhysRevLett.125.038003
Optimizing n-type doping of ZnGeN 2 and ZnSiN 2
Adamski, N. L., Zhu, Z., Wickramaratne, D., & Van de Walle, C. G. (2019). Optimizing n-type doping of ZnGeN 2 and ZnSiN 2. Physical Review B, 100, 155206. https://doi.org/10.1103/PhysRevB.100.155206
Phase-field-based calculations of the disregistry fields of static extended dislocations in FCC metals
Xu, S., Mianroodi, J. R., Hunter, A., Beyerlein, I. J., & Svendsen, B. (2019). Phase-field-based calculations of the disregistry fields of static extended dislocations in FCC metals. Philosophical Magazine, 99, 1400\textendash1428. https://doi.org/https://doi.org/10.1080/14786435.2019.1582850
Origins of significant reduction of lattice thermal conductivity in graphene allotropes
Choudhry, U., Yue, S., & Liao, B. (2019). Origins of significant reduction of lattice thermal conductivity in graphene allotropes. Physical Review B, 100, 165401. https://doi.org/10.1103/PhysRevB.100.165401
Narrow equilibrium window for complex coacervation of tau and RNA under cellular conditions
Lin, Y., McCarty, J., Rauch, J. N., Delaney, K. T., Kosik, K. S., Fredrickson, G. H., et al. (2019). Narrow equilibrium window for complex coacervation of tau and RNA under cellular conditions. Elife, 8, e42571. https://doi.org/10.7554/eLife.42571