Publications

CSC research acknowledged in publications and presentations.

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Use was made of computational facilities purchased with funds from the National Science Foundation (CNS-1725797) and administered by the Center for Scientific Computing (CSC). The CSC is supported by the California NanoSystems Institute and the Materials Research Science and Engineering Center (MRSEC; NSF DMR 2308708) at UC Santa Barbara.

Selected Publications

2014

Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system
Oakley, T. H., Alexandrou, M. A., Ngo, R., Pankey, S., Churchill, C. K., Chen, W., & Lopker, K. B. (2014). Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system. Bmc Bioinformatics, 15, 230.
Oxide interfaces for novel electronic applications
Bjaalie, L., Himmetoglu, B., Weston, L., Janotti, A., & Van de Walle, G. C. (2014). Oxide interfaces for novel electronic applications. New Journal Of Physics, 16, 025005.
Oxygen Adsorption on Irreducible Oxides Doped with Higher Valence Ions: O$_2$ Binding to the Dopant
etien, S. C. \, & Metiu, H. (2014). Oxygen Adsorption on Irreducible Oxides Doped with Higher Valence Ions: O$_2$ Binding to the Dopant. J. Phys. Chem. C, 118, 23070-23082. https://doi.org/10.1021/jp505918e
Parallel processing of filtered queries in attributed semantic graphs
Lugowski, A., Kamil, S., Buluc, A., Williams, S., Duriakova, E., Oliker, L., et al. (2014). Parallel processing of filtered queries in attributed semantic graphs. Journal Of Parallel And Distributed Computing.
Phase Coexistence Calculations of Reversibly Bonded Block Copolymers: A Unit Cell Gibbs Ensemble Approach
Mester, Z., Lynd, N. A., Delaney, K. T., & Fredrickson, G. H. (2014). Phase Coexistence Calculations of Reversibly Bonded Block Copolymers: A Unit Cell Gibbs Ensemble Approach. Macromolecules.
Phase stability and property evolution of biphasic Ti\textendashNi\textendashSn alloys for use in thermoelectric applications
Douglas, J. E., Birkel, C. S., Verma, N., Miller, V. M., Miao, M. -S., Stucky, G. D., et al. (2014). Phase stability and property evolution of biphasic Ti\textendashNi\textendashSn alloys for use in thermoelectric applications. Journal Of Applied Physics, 115, 043720\textendash043720. https://doi.org/http://dx.doi.org/+10.1063/1.4862955
Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid
Pankey, S., Minin, V. N., Imholte, G. C., Suchard, M. A., & Oakley, T. H. (2014). Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid. Proceedings Of The National Academy Of Sciences, 111, E4736\textendashE4742.
Pressure-stabilized lithium caesides with caesium anions beyond the- 1 state
Botana, J., & Miao, M. -S. (2014). Pressure-stabilized lithium caesides with caesium anions beyond the- 1 state. Nature Communications, 5.
Quadrites and Crossed-Chain Crystal Structures in Polymer Semiconductors
Takacs, C. J., Brady, M. A., Treat, N. D., Kramer, E. J., & Chabinyc, M. L. (2014). Quadrites and Crossed-Chain Crystal Structures in Polymer Semiconductors. Nano Letters, 14, 3096\textendash3101.
Rapid Microwave Preparation and ab Initio Studies of the Stability of the Complex Noble Metal Oxides La2BaPdO5 and La2BaPtO5
Misch, L. M., Brgoch, J., Birkel, A., Mates, T. E., Stucky, G. D., & Seshadri, R. (2014). Rapid Microwave Preparation and ab Initio Studies of the Stability of the Complex Noble Metal Oxides La2BaPdO5 and La2BaPtO5. Inorganic Chemistry.
Regional White Matter Variation Associated with Domain-specific Metacognitive Accuracy
Baird, B., Cieslak, M., Smallwood, J., Grafton, S. T., & Schooler, J. W. (2014). Regional White Matter Variation Associated with Domain-specific Metacognitive Accuracy.
Salting out the polar polymorph: Analysis by alchemical solvent transformation
Duff, N., Dahal, Y. R., Schmit, J. D., & Peters, B. (2014). Salting out the polar polymorph: Analysis by alchemical solvent transformation. Journal Of Chemical Physics, 140, 014501. https://doi.org/10.1063/1.4853775 (Original work published 01/2014 C.E.)
Self-consistent field theory investigation of directed self-assembly in cylindrical confinement
Laachi, N., Delaney, K. T., Kim, B., Hur, S. -M., Bristol, R., Shykind, D., et al. (2014). Self-consistent field theory investigation of directed self-assembly in cylindrical confinement. Journal Of Polymer Science Part B: Polymer Physics.
Shear-Dominated Plastic Behavior of a Cross-ply Dyneema\textregistered Composite
Nazarian, O., & Zok, F. W. (2014). Shear-Dominated Plastic Behavior of a Cross-ply Dyneema\textregistered Composite. Composites Part A: Applied Science And Manufacturing.
Silicon carbide photonic crystal cavities with integrated color centers
Calusine, G., Politi, A., & Awschalom, D. D. (2014). Silicon carbide photonic crystal cavities with integrated color centers. Applied Physics Letters, 105, -. https://doi.org/http://dx.doi.org/10.1063/1.4890083
Simulating Articulated Subspace Self-Contact
Teng, Y., Otaduy, M. A., Madrid, U. R. J. C., & Kim, T. (2014). Simulating Articulated Subspace Self-Contact. Siggraph 2014. Retrieved de http://www.mat.ucsb.edu/~kim/SASS/TengOtaduyKim2014.pdf http://youtu.be/mjT9ZfIYN-s
Simulations of Protein Aggregation: Insights from Atomistic and Coarse-Grained Models
Morriss-Andrews, A., & Shea, J. -E. (2014). Simulations of Protein Aggregation: Insights from Atomistic and Coarse-Grained Models. The Journal Of Physical Chemistry Letters.
Striking Effect of Intra-versus Intermolecular Hydrogen Bonding on Zwitterions: Physical and Electronic Properties
Zheng, Y., Miao, M. -S., Zhang, Y., Nguyen, T. -Q., & Wudl, F. (2014). Striking Effect of Intra-versus Intermolecular Hydrogen Bonding on Zwitterions: Physical and Electronic Properties. Journal Of The American Chemical Society.
Structure and energetics of LaAlO 3 (001) surfaces
Krishnaswamy, K., Dreyer, C. E., Janotti, A., & Van de Walle, C. G. (2014). Structure and energetics of LaAlO 3 (001) surfaces. Physical Review B, 90, 235436.
Thermodynamic and kinetic aspects of defectivity in directed self-assembly of cylinder-forming diblock copolymers in laterally confining thin channels
Kim, B. J., Laachi, N., Delaney, K. T., Carilli, M. F., Kramer, E. J., & Fredrickson, G. H. (2014). Thermodynamic and kinetic aspects of defectivity in directed self-assembly of cylinder-forming diblock copolymers in laterally confining thin channels. Journal Of Applied Polymer Science, 131, 40790. https://doi.org/10.1002/app.40790 (Original work published 12/2014 C.E.)