Publications

CSC research acknowledged in publications and presentations.

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Use was made of computational facilities purchased with funds from the National Science Foundation (CNS-1725797) and administered by the Center for Scientific Computing (CSC). The CSC is supported by the California NanoSystems Institute and the Materials Research Science and Engineering Center (MRSEC; NSF DMR 2308708) at UC Santa Barbara.

Selected Publications

2013

Experimental interrogation of the path dependence and stochasticity of protein evolution using phage-assisted continuous evolution
Dickinson, B. C., Leconte, A. M., Allen, B., Esvelt, K. M., & Liu, D. R. (2013). Experimental interrogation of the path dependence and stochasticity of protein evolution using phage-assisted continuous evolution. Proceedings Of The National Academy Of Sciences, 110, 9007\textendash9012.
Fluctuating hydrodynamic methods for fluid-structure interactions in confined channel geometries
Wang, Y., & Atzberger, P. (2013). Fluctuating hydrodynamic methods for fluid-structure interactions in confined channel geometries.
Fluctuating hydrodynamics simulations of coarse-grained lipid membranes under steady-state conditions and in shear flow
Brandt, E. G. (2013). Fluctuating hydrodynamics simulations of coarse-grained lipid membranes under steady-state conditions and in shear flow. Physical Review E, 88, 012714.
Formation of interfacial traps upon surface protonation in small molecule solution processed bulk heterojunctions probed by photoelectron spectroscopy
Ratcliff, E. L., Bakus, R. C., Welch, G. C., van der Poll, T. S., Garcia, A., Cowan, S. R., et al. (2013). Formation of interfacial traps upon surface protonation in small molecule solution processed bulk heterojunctions probed by photoelectron spectroscopy. Journal Of Materials Chemistry C, 1, 6223\textendash6234.
Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae
Alexandrou, M. A., Swartz, B. A., Matzke, N. J., & Oakley, T. H. (2013). Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae. Molecular Phylogenetics And Evolution, 69, 514\textendash523.
Gold-Catalyzed Cyclizations of cis-Enediynes: Insights into the Nature of Gold\textendashAryne Interactions
Wang, Y., Yepremyan, A., Ghorai, S., Todd, R., Aue, D. H., & Zhang, L. (2013). Gold-Catalyzed Cyclizations of cis-Enediynes: Insights into the Nature of Gold\textendashAryne Interactions. Angewandte Chemie, 125, 7949\textendash7953.
Ground states of spin-1/2 triangular antiferromagnets in a magnetic field
Chen, R., Ju, H., Jiang, H. C., Starykh, O. A., & Balents, L. (2013). Ground states of spin-1/2 triangular antiferromagnets in a magnetic field. Phys. Rev. B, (in press).
High-productivity and high-performance analysis of filtered semantic graphs
Buluc, A., Duriakova, E., Fox, A., Gilbert, J. R., Kamil, S., Lugowski, A., et al. (2013). High-productivity and high-performance analysis of filtered semantic graphs. Presented at the. IEEE.
The hole shrink problem: Theoretical studies of directed self-assembly in cylindrical confinement
Laachi, N., Delaney, K. T., Kim, B., Hur, S. -M., Bristol, R., Shykind, D., et al. (2013). The hole shrink problem: Theoretical studies of directed self-assembly in cylindrical confinement. Presented at the. International Society for Optics and Photonics.
Hybrid Continuum-Particle Method for Fluctuating Lipid Bilayer Membranes with Diffusing Protein Inclusions
Sigurdsson, J. K., Brown, F. L. H., & Atzberger, P. J. (2013). Hybrid Continuum-Particle Method for Fluctuating Lipid Bilayer Membranes with Diffusing Protein Inclusions. J. Of Comp. Phys., 252, 65. https://doi.org/http://dx.doi.org/10.1016/j.jcp.2013.06.016
Impact of carbon and nitrogen impurities in high-k dielectrics on metal-oxide-semiconductor devices
Choi, M., Lyons, J. L., Janotti, A., & Van de Walle, C. G. (2013). Impact of carbon and nitrogen impurities in high-k dielectrics on metal-oxide-semiconductor devices. Appl. Phys. Lett, 102, 142902. https://doi.org/http://dx.doi.org/10.1063/1.4801497
Impact of Group-II Acceptors on the Electrical and Optical Properties of GaN
Lyons, J. L., Janotti, A., & Van de Walle, C. G. (2013). Impact of Group-II Acceptors on the Electrical and Optical Properties of GaN. J. Appl. Phys., 52, 08JJ04. https://doi.org/http://dx.doi.org/10.7567/JJAP.52.08JJ04
Impact of native defects in high-k dielectric oxides on GaN/oxide metal\textendashoxide\textendashsemiconductor devices
Choi, M., Lyons, J. L., Janotti, A., & Van de Walle, C. G. (2013). Impact of native defects in high-k dielectric oxides on GaN/oxide metal\textendashoxide\textendashsemiconductor devices. Physica Status Solidi (B), 250, 787\textendash791.
Impact of Regiochemistry and Isoelectronic Bridgehead Sub-stitution on the Molecular Shape and Bulk Organization of Narrow Bandgap Chromophores
Welch, G. C., Bakus, R. C., Teat, S. J., & Bazan, G. C. (2013). Impact of Regiochemistry and Isoelectronic Bridgehead Sub-stitution on the Molecular Shape and Bulk Organization of Narrow Bandgap Chromophores. Journal Of The American Chemical Society, 135, 2298.
Initiation of Assembly of Tau(273-284) and its DK280 Mutant: An Experimental and Computational Study
Larini, L., Gessel, M. M., LaPointe, N. E., Do, T. D., Bowers, M., Feinstein, S. C., & Shea, J. -E. (2013). Initiation of Assembly of Tau(273-284) and its DK280 Mutant: An Experimental and Computational Study. Phys. Chem. Chem. Phys., 15, 8916-8928. https://doi.org/http://dx.doi.org/10.1039/C3CP00063J
Intra-and Inter-Frequency Brain Network Structure in Health and Schizophrenia
Siebenhuhner, F., Weiss, S. A., Coppola, R., Weinberger, D. R., & Bassett, D. S. (2013). Intra-and Inter-Frequency Brain Network Structure in Health and Schizophrenia. Plos One, 8. https://doi.org/10.1371/journal.pone.0072351 (Original work published 08/2013 C.E.)
Ion Mobility Spectrometry Reveals the Mechanism of Amyloid Formation of A beta (25\textendash35) and Its Modulation by Inhibitors at the Molecular Level: Epigallocatechin Gallate and Scyllo-inositol
Bleiholder, C., Do, T. D., Wu, C., Economou, N. J., Bernstein, S. S., Buratto, S. K., et al. (2013). Ion Mobility Spectrometry Reveals the Mechanism of Amyloid Formation of A beta (25\textendash35) and Its Modulation by Inhibitors at the Molecular Level: Epigallocatechin Gallate and Scyllo-inositol. Journal Of The American Chemical Society, 135, 16926\textendash16937.
Landau theory of topological defects in multiferroic hexagonal manganites
Artyukhin, S., Delaney, K. T., Spaldin, N. A., & Mostovoy, M. (2013). Landau theory of topological defects in multiferroic hexagonal manganites. Nature Materials. https://doi.org/doi:10.1038/nmat3786
LiH as a Li+ and H- ion provider
Hoang, K., & Van de Walle, C. G. (2013). LiH as a Li+ and H- ion provider. Solid State Ionics, 253, 53\textendash56.
Local Environments of Dilute Activator Ions in the Solid-State Lighting Phosphor Y3\textendashx Ce x Al5O12
George, N. C., Pell, A. J., Dantelle, G., Page, K., Llobet, A., Balasubramanian, M., et al. (2013). Local Environments of Dilute Activator Ions in the Solid-State Lighting Phosphor Y3\textendashx Ce x Al5O12. Chemistry Of Materials, 25, 3979\textendash3995.