Publications

CSC research acknowledged in publications and presentations.

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Use was made of computational facilities purchased with funds from the National Science Foundation (CNS-1725797) and administered by the Center for Scientific Computing (CSC). The CSC is supported by the California NanoSystems Institute and the Materials Research Science and Engineering Center (MRSEC; NSF DMR 2308708) at UC Santa Barbara.

Selected Publications

2023

A Small Tau Fragment Specifically Templates Four Repeat Tau Aggregates Through Multiple Generations.
Longhini, A. P., Dubose, A., Lobo, S., Vijayan, V., Bai, Y., Keane, E., et al. (2023). A Small Tau Fragment Specifically Templates Four Repeat Tau Aggregates Through Multiple Generations. Biorxiv: The Preprint Server For Biology.
Dynamical effects of magnetic opacity in neutron star accretion columns
Sheng, X., Zhang, L., Blaes, O., & Jiang, Y. -F. (2023). Dynamical effects of magnetic opacity in neutron star accretion columns. Monthly Notices Of The Royal Astronomical Society, 524, 2431-2445.
Relationships between Molecular Structural Order Parameters and Equilibrium Water Dynamics in Aqueous Mixtures
Brown, D., Webber, T., Jiao, S., Mirabal, D. M. R., Han, S., & Shell, S. (2023). Relationships between Molecular Structural Order Parameters and Equilibrium Water Dynamics in Aqueous Mixtures. The Journal Of Physical Chemistry B.
Interaction of extended dislocations with nanovoid clusters
Roach, A., Xu, S., Luscher, D., Gianola, D. S., & Beyerlein, I. J. (2023). Interaction of extended dislocations with nanovoid clusters. International Journal Of Plasticity, 168, 103684.
A machine learning model to predict yield surfaces from crystal plasticity simulations
Nascimento, A. (2023). A machine learning model to predict yield surfaces from crystal plasticity simulations. International Journal Of Plasticity, 161, 103507.
Dynamical downfolding for localized quantum states
Romanova, M., Weng, G., Apelian, A., & Vl\vcek, V. \vech. (2023). Dynamical downfolding for localized quantum states. Npj Computational Materials, 9, 126.
Phase-field simulations of morphology development in reactive polymer blending
Sengupta, R., Tikekar, M. D., Raj, J., Delaney, K. T., Villet, M. C., & Fredrickson, G. H. (2023). Phase-field simulations of morphology development in reactive polymer blending. Journal Of Rheology, 67, 1-14.
Flow dynamics and sedimentation at a turbidity channel confluence in the Yinggehai basin, northwestern South China sea
Tian, D., Jiang, T., Wang, H., Zhang, D., & Meiburg, E. (2023). Flow dynamics and sedimentation at a turbidity channel confluence in the Yinggehai basin, northwestern South China sea. Geoenergy Science And Engineering, 227, 211927.
Metapopulation dynamics of SARS-CoV-2 transmission in a small-scale Amazonian society
Kraft, T., Seabright, E., Alami, S., Jenness, S., Hooper, P., Beheim, B., et al. (2023). Metapopulation dynamics of SARS-CoV-2 transmission in a small-scale Amazonian society. Plos Biology, 21, e3002108.
Targeted hypermutation of putative antigen sensors in multicellular bacteria
e, H. D. \, Eisenberg, A., Junkins, E., Ganesh, A., Cordero, O., Paul, B., et al. (2023). Targeted hypermutation of putative antigen sensors in multicellular bacteria. Biorxiv, 2023-09.
Redox Mechanisms, Structural Changes, and Electrochemistry of the Wadsley—Roth Li x TiNb2O7 Electrode Material
Saber, M., Behara, S. S., & Van der Ven, A. (2023). Redox Mechanisms, Structural Changes, and Electrochemistry of the Wadsley—Roth Li x TiNb2O7 Electrode Material. Chemistry Of Materials, 35, 9657-9668.
Thermodynamic modeling and experimental data reveal that sugars stabilize proteins according to an excluded volume mechanism
Arsiccio, A., Sarter, T., Polidori, I., Winter, G., Pisano, R., & Shea, J. -E. (2023). Thermodynamic modeling and experimental data reveal that sugars stabilize proteins according to an excluded volume mechanism. Journal Of The American Chemical Society, 145, 16678-16690.
Multiscale modeling of solute diffusion in triblock copolymer membranes
Cooper, A. J., Howard, M. P., Kadulkar, S., Zhao, D., Delaney, K. T., Ganesan, V., et al. (2023). Multiscale modeling of solute diffusion in triblock copolymer membranes. The Journal Of Chemical Physics, 158.
A biocatalytic platform for asymmetric alkylation of $\alpha$-keto acids by mining and engineering of methyltransferases
Ju, S., Kuzelka, K., Guo, R., Krohn-Hansen, B., Wu, J., Nair, S., & Yang, Y. (2023). A biocatalytic platform for asymmetric alkylation of $\alpha$-keto acids by mining and engineering of methyltransferases. Nature Communications, 14, 5704.
Tailoring Writability and Performance of Star Block Copolypeptides Hydrogels through Side-Chain Design
Garcia, R., Murphy, E. A., Sinha, N. J., Okayama, Y., Urue\~na, J., Helgeson, M. E., et al. (2023). Tailoring Writability and Performance of Star Block Copolypeptides Hydrogels through Side-Chain Design. Small, 19, 2302794.
Desperately seeking soft structures
Fredrickson, G. H. (2023). Desperately seeking soft structures. Proceedings Of The National Academy Of Sciences, 120, e2318123120.
Dynamic correlations in lipid bilayer membranes over finite time intervals
Schoch, R., Haran, G., & Brown, F. L. H. (2023). Dynamic correlations in lipid bilayer membranes over finite time intervals. The Journal Of Chemical Physics, 158.
Mesostructured Materials with Controllable Long-Range Orientational Ordering and Anisotropic Properties
Jahnke, J., Kim, D., Wildemuth, D., Nolla, J., Berkow, M., Gwak, H., et al. (2023). Mesostructured Materials with Controllable Long-Range Orientational Ordering and Anisotropic Properties. Advanced Materials, 35, 2306800.
Covalent Adaptable Networks with Rapid UV Response Based on Reversible Thiol—Ene Reactions in Silicone Elastomers
Huo, M., Hu, J. G., & Clarke, D. (2023). Covalent Adaptable Networks with Rapid UV Response Based on Reversible Thiol—Ene Reactions in Silicone Elastomers. Macromolecules, 56, 9107-9116.
Entanglement domain walls in monitored quantum circuits and the directed polymer in a random environment
Li, Y., Vijay, S., & Fisher, M. P. A. (2023). Entanglement domain walls in monitored quantum circuits and the directed polymer in a random environment. Prx Quantum, 4, 010331.