Publications
CSC research acknowledged in publications and presentations.
Please remember to continue to acknowledge the use of CSC resources with
Use was made of computational facilities purchased with funds from the National Science Foundation (CNS-1725797) and administered by the Center for Scientific Computing (CSC). The CSC is supported by the California NanoSystems Institute and the Materials Research Science and Engineering Center (MRSEC; NSF DMR 2308708) at UC Santa Barbara.
Selected Publications
2007
Probing the structural hierarchy and energy landscape of an RNA T-loop hairpin
Probing the structural hierarchy and energy landscape of an RNA T-loop hairpin. Nucleic Acids Res, 35, 6995-7002.
. (2007). 2006
Aggregation of polyalanine in a hydrophobic environment
Aggregation of polyalanine in a hydrophobic environment. J Chem Phys., 124(13), 134904.
. (2006). Controlling the near surface orientation of block copolymer lamellae and cylinders using chain architecture and surface energy
Controlling the near surface orientation of block copolymer lamellae and cylinders using chain architecture and surface energy. Pmse Preprints, 95, 41ä\ o\~n42.
. (2006). Defects and their removal in block copolymer thin film simulations
Defects and their removal in block copolymer thin film simulations. Journal Of Polymer Science. Part B, Polymer Physics, -44, 2495.
. (2006). Density functional study of the CO oxydation on a doped rutile TiO2(110): effects of ionic Au in catalysis
Density functional study of the CO oxydation on a doped rutile TiO2(110): effects of ionic Au in catalysis. Catal. Lett., 107, 143.
. (2006). Effects of cation d states on III-nitride and II-oxide wide-band-gap semiconductors
Effects of cation d states on III-nitride and II-oxide wide-band-gap semiconductors. Physical Review B, 74, 45202.
. (2006). Effects of solvent on the structure of the Alzheimer amyloid-b(25-35) peptide
Effects of solvent on the structure of the Alzheimer amyloid-b(25-35) peptide. Biophys. J., 91, 1638.
. (2006). Effects of surface tethering on protein folding mechanisms
Effects of surface tethering on protein folding mechanisms. Proc. Nat. Acad. Sci. Usa, 103, 8396-8401.
. (2006). Electronic structure of nitride surfaces
Electronic structure of nitride surfaces. Journal Of Crystal Growth, First International Symposium On Growth Of Nitrides - Isgn-1, 300, 199-203.
. (2006). Folding landscapes of the Alzheimer A\beta12-28 peptide from all-atom replica exchange molecular dynamics simulations in explicit solvent
Folding landscapes of the Alzheimer A\beta12-28 peptide from all-atom replica exchange molecular dynamics simulations in explicit solvent. J. Mol. Biol., 362, 567-579.
. (2006). Kinematic Inversion of the 2004 Mw 6.0 Parkfield Earthquake
Kinematic Inversion of the 2004 Mw 6.0 Parkfield Earthquake. Bulletin Of The Seismological Society Of America, 96, Jan-37.
. (2006). New insights into the role of native point defects in ZnO
New insights into the role of native point defects in ZnO. Journal Of Crystal Growth, 287, 58-65.
. (2006). Orbital magnetic field effects in spin liquid with spinon Fermi sea: Possible application to kappa-(ET)2 Cu2 (CN)3
Orbital magnetic field effects in spin liquid with spinon Fermi sea: Possible application to kappa-(ET)2 Cu2 (CN)3. Phys. Rev. B, 73, 155115.
. (2006). Origins of Fermi-level pinning on GaN and InN polar and nonpolar surfaces
Origins of Fermi-level pinning on GaN and InN polar and nonpolar surfaces. Europhys. Lett., 76, 305.
. (2006). Prediction of Broadband Ground-Motion Time Histories: Hybrid Low/High- Frequency Method with Correlated Random Source Parameters
Prediction of Broadband Ground-Motion Time Histories: Hybrid Low/High- Frequency Method with Correlated Random Source Parameters. Bulletin Of The Seismological Society Of America, 96, 2118-2130.
. (2006). Structure of the 21-30 fragment of amyloid Beta protein
Structure of the 21-30 fragment of amyloid Beta protein. Protein Science, 15, 1239.
. (2006). The thermodynamics of folding of a beta hairpin peptide probed through replica exchange molecular dynamics simulations
The thermodynamics of folding of a beta hairpin peptide probed through replica exchange molecular dynamics simulations. Theor. Chem. Acc., 116, 262.
. (2006). 2005
2004 Mw 6.0 Parkfield, California, earthquake: Inversion of Near-Source Ground Motion Using Different Datasets
2004 Mw 6.0 Parkfield, California, earthquake: Inversion of Near-Source Ground Motion Using Different Datasets. Geophysical Research Letters, 32, L23312.
. (2005). Effects of frustration, confinement, and surface interactions on the dimerization of an off-lattice beta-barrel protein
Effects of frustration, confinement, and surface interactions on the dimerization of an off-lattice beta-barrel protein. J. Chem. Phys., 123, 174707.
. (2005). The Equation of State for QCD with 2+1 Flavors of Quarks, The MILC Collaboration
The Equation of State for QCD with 2+1 Flavors of Quarks, The MILC Collaboration. Proceedings Of Science, (Lattice 2005), 156.
. (2005).